ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ni3D1 - ECOD Domain | ECOD

ECOD/Domains/e5ni3D1

e5ni3D1

UID: 002404553

PDB

Range: D:3-229
PDB: 5NI3 chain D(all domains)
UniProt: P42212 (all domains)
Gene: GFP

Molecule: Green fluorescent protein

3D Structure

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Related Domains

Browse other domains in GFP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupGFP-like(271)

HH-groupGFP-like(271.1)

TT-groupGFP-like(271.1.1)

FFamilyGFP(271.1.1.1)

Ligands

in contact, ≤ 4 Å

[(4~{S})-4,5,6,7,8,9-hexahydro-1~{H}-cycloocta[d][1,2,3]triazol-4-yl] hydrogen carbonateDB5
Sodium ionNA
metal

+ 1 additive (Glycerin)

GlycerinGOL

Pfam Families

Green fluorescent protein

ClanCL0069GFP

External Links

ECOD PDB View: 5NI3 RCSB PDB: 5NI3 PDBe: 5NI3 UniProt: P42212

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.