ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5omiC1 - ECOD Domain | ECOD

ECOD/Domains/e5omiC1

e5omiC1

UID: 002405041

PDB

Range: C:303-416
PDB: 5OMI chain C(all domains)
UniProt: P08669 (all domains)
Gene: GPC

Molecule: Pre-glycoprotein polyprotein GP complex

3D Structure

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Related Domains

Browse other domains in Arena_glycoprot →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupArenavirus glycoprotein GP2(1158)

HH-groupArenavirus glycoprotein GP2(1158.1)

TT-groupArenavirus glycoprotein GP2(1158.1.1)

FFamilyArena_glycoprot(1158.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Chloride ionCL
Sodium ionNA

Pfam Families

PF00798Arena_glycoprot

Arenavirus glycoprotein

External Links

ECOD PDB View: 5OMI RCSB PDB: 5OMI PDBe: 5OMI UniProt: P08669

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.