ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5oodB1 - ECOD Domain | ECOD

ECOD/Domains/e5oodB1

e5oodB1

UID: 002405077

PDB

Range: B:5-146
PDB: 5OOD chain B(all domains)
UniProt: P68135 (all domains)
Gene: ACTA1

Molecule: Actin, alpha skeletal muscle

3D Structure

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Related Domains

Browse other domains in Actin →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyActin(2484.1.1.2)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
(4~{R},7~{R},10~{S},13~{S},15~{E},19~{S})-10-(4-azanylbutyl)-4-(4-hydroxyphenyl)-7-(1~{H}-indol-3-ylmethyl)-8,13,15,19-tetramethyl-1-oxa-5,8,11-triazacyclononadec-15-ene-2,6,9,12-tetrone9ZK

Pfam Families

Actin

ClanCL0108Actin_ATPase

External Links

ECOD PDB View: 5OOD RCSB PDB: 5OOD PDBe: 5OOD UniProt: P68135

Downloads

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Magnesium ionMG

metalwithin 5 Å only

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.