ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5opdA2 - ECOD Domain | ECOD

ECOD/Domains/e5opdA2

e5opdA2

UID: 002405113

PDB

Range: A:301-393
PDB: 5OPD chain A(all domains)
UniProt: A8A5E6 (all domains)
Gene: tuf1

Molecule: Elongation factor Tu 1

3D Structure

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Related Domains

Browse other domains in GTP_EFTU_D3 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAminomethyltransferase beta-barrel domain(1.1.8)

FFamilyGTP_EFTU_D3(1.1.8.1)

Ligands

in contact, ≤ 4 Å

Iodide ionIOD
Sodium ionNA
metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03143GTP_EFTU_D3

Elongation factor Tu C-terminal domain

ClanCL0740GCV_T_C

External Links

ECOD PDB View: 5OPD RCSB PDB: 5OPD PDBe: 5OPD UniProt: A8A5E6

Downloads

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