ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5oyaN1 - ECOD Domain | ECOD

ECOD/Domains/e5oyaN1

e5oyaN1

UID: 002405226

PDB

Range: N:1-139
PDB: 5OYA chain N(all domains)
UniProt: A0A3B6UEF5 (all domains)
Gene: RBCS

Molecule: Rubisco small subunit

3D Structure

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Related Domains

Browse other domains in RuBisCO_small →

Classification

AArchitecturea+b two layers(a.11)

XX-groupReverse ferredoxin(302)

HH-groupRuBisCO, small subunit(302.2)

TT-groupRuBisCO, small subunit(302.2.1)

FFamilyRuBisCO_small(302.2.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metalwithin 5 Å only

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00101RuBisCO_small

Ribulose bisphosphate carboxylase, small chain

External Links

ECOD PDB View: 5OYA RCSB PDB: 5OYA PDBe: 5OYA UniProt: A0A3B6UEF5

Downloads

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