ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vx8B1 - ECOD Domain | ECOD

ECOD/Domains/e5vx8B1

e5vx8B1

UID: 002406396

PDB

Range: B:65-223
PDB: 5VX8 chain B(all domains)
UniProt: D7F7M7 (all domains)

Molecule: Outer capsid protein VP4

3D Structure

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Related Domains

Browse other domains in VP4_haemagglut →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilyVP4_haemagglut(10.1.1.6)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00426VP4_haemagglut

Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain

ClanCL0004Concanavalin

External Links

ECOD PDB View: 5VX8 RCSB PDB: 5VX8 PDBe: 5VX8 UniProt: D7F7M7

Downloads

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