ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vyeD2 - ECOD Domain | ECOD

ECOD/Domains/e5vyeD2

e5vyeD2

UID: 002406402

PDB

Range: D:5-252
PDB: 5VYE chain D(all domains)
UniProt: A0A166JNM8 (all domains)
Gene: A3L25_002145

Molecule: L-threonine aldolase

3D Structure

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Related Domains

Browse other domains in Beta_elim_lyase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilyBeta_elim_lyase(7577.1.1.8)

Ligands

in contact, ≤ 4 Å

(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATEPLR

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01212Beta_elim_lyase

Beta-eliminating lyase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 5VYE RCSB PDB: 5VYE PDBe: 5VYE UniProt: A0A166JNM8

Downloads

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