ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xncC2 - ECOD Domain | ECOD

ECOD/Domains/e5xncC2

e5xncC2

UID: 002406826

PDB

Range: C:91-351
PDB: 5XNC chain C(all domains)
UniProt: Q5JIZ3 (all domains)
Gene: bpsA

Molecule: N(4)-bis(aminopropyl)spermidine synthase

3D Structure

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Related Domains

Browse other domains in BpsA_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyBpsA_C(2003.1.5.18)

Ligands

in contact, ≤ 4 Å

5'-S-methyl-5'-thioadenosineMTA
drugDrugBank DB02282
FE (III) IONFE
metal
N,N-bis(3-aminopropyl)butane-1,4-diamine

Pfam Families

Branched-chain polyamine synthase A C-terminal domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5XNC RCSB PDB: 5XNC PDBe: 5XNC UniProt: Q5JIZ3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.