ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xvbT1 - ECOD Domain | ECOD

ECOD/Domains/e5xvbT1

e5xvbT1

UID: 002406992

PDB

Range: T:188-276
PDB: 5XVB chain T(all domains)
UniProt: A0A3B6UEQ0 (all domains)

Molecule: [NiFe]-hydrogenase 2 small subunit

3D Structure

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Related Domains

Browse other domains in NiFe_hyd_SSU_C →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupFe-S cluster-binding domain in nickel-iron hydrogenase small subunit(4024)

HH-groupFe-S cluster-binding domain in nickel-iron hydrogenase small subunit(4024.1)

TT-groupFe-S cluster-binding domain in nickel-iron hydrogenase small subunit(4024.1.1)

FFamilyNiFe_hyd_SSU_C(4024.1.1.1)

Ligands

in contact, ≤ 4 Å

FE3-S4 CLUSTERF3S
Iron/sulfur clusterSF4

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF14720NiFe_hyd_SSU_C

NiFe/NiFeSe hydrogenase small subunit C-terminal

External Links

ECOD PDB View: 5XVB RCSB PDB: 5XVB PDBe: 5XVB UniProt: A0A3B6UEQ0

Downloads

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Drug annotations from DrugDomain.