ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5y4pA1 - ECOD Domain | ECOD

ECOD/Domains/e5y4pA1

e5y4pA1

UID: 002407408

PDB

Range: A:69-293
PDB: 5Y4P chain A(all domains)
UniProt: Q4DA73 (all domains)
Gene: Tc00.1047053510339.50

Molecule: Spermidine synthase, putative

3D Structure

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Related Domains

Browse other domains in Spermine_synth →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilySpermine_synth(2003.1.5.13)

Ligands

in contact, ≤ 4 Å

5-methoxy-2-[(5R)-5-methyl-4,5-dihydro-1H-imidazol-2-yl]phenol8QO
5'-[(S)-(3-AMINOPROPYL)(METHYL)-LAMBDA~4~-SULFANYL]-5'-DEOXYADENOSINES4M

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01564Spermine_synth

Spermine/spermidine synthase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5Y4P RCSB PDB: 5Y4P PDBe: 5Y4P UniProt: Q4DA73

Downloads

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