ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5y8kA1 - ECOD Domain | ECOD

ECOD/Domains/e5y8kA1

e5y8kA1

UID: 002407519

PDB

Range: A:1-160
PDB: 5Y8K chain A(all domains)
UniProt: P9WNY5 (all domains)
Gene: mmsB

Molecule: Probable 3-hydroxyisobutyrate dehydrogenase

3D Structure

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Related Domains

Browse other domains in NAD_binding_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyNAD_binding_2(2003.1.1.42)

Ligands

in contact, ≤ 4 Å

SerineSER
drugDrugBank DB00133
(2~{S})-2-methylpentanedioic acid9ON
Acrylic acidAKR

+ 1 additive (Glycerin)

Pfam Families

PF03446NAD_binding_2

NAD binding domain of 6-phosphogluconate dehydrogenase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5Y8K RCSB PDB: 5Y8K PDBe: 5Y8K UniProt: P9WNY5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.