ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5y8wA1 - ECOD Domain | ECOD

ECOD/Domains/e5y8wA1

e5y8wA1

UID: 002407543

PDB

Range: A:42-165
PDB: 5Y8W chain A(all domains)
UniProt: O60885 (all domains)
Gene: BRD4

Molecule: Bromodomain-containing protein 4

3D Structure

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Related Domains

Browse other domains in Bromodomain →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBromodomain-like(633)

HH-groupBromodomain(633.1)

TT-groupBromodomain(633.1.1)

FFamilyBromodomain(633.1.1.1)

Ligands

in contact, ≤ 4 Å

5-bromanyl-2-methoxy-N-(3-methyl-6-oxidanyl-1,2-benzoxazol-5-yl)benzenesulfonamide8PU
Sodium ionNA
metal

+ 3 additives (Glycerin, Nitrate, 1,2-ETHANEDIOL)

GlycerinGOL

Pfam Families

PF00439Bromodomain

Bromodomain

External Links

ECOD PDB View: 5Y8W RCSB PDB: 5Y8W PDBe: 5Y8W UniProt: O60885

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

NitrateNO3

DrugBank DB14049

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.