ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5yb5B1 - ECOD Domain | ECOD

ECOD/Domains/e5yb5B1

e5yb5B1

UID: 002407580

PDB

Range: B:1-318
PDB: 5YB5 chain B(all domains)
UniProt: A0A0R5NGA4 (all domains)
Gene: EH2

Molecule: Epoxide hydrolase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Abhydrolase_1, Hydrolase_4 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta-Hydrolases(7579)

HH-groupalpha/beta-Hydrolases(7579.1)

TT-groupalpha/beta-Hydrolases(7579.1.1)

FFamilyAbhydrolase_1, Hydrolase_4(7579.1.1.95)

Ligands

in contact, ≤ 4 Å

(S)-4-Nitrostyrene oxideSNO
drugDrugBank DB04782

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00561Abhydrolase_1

alpha/beta hydrolase fold

ClanCL0028AB_hydrolase

PF12146Hydrolase_4

Serine aminopeptidase, S33

ClanCL0028AB_hydrolase

External Links

ECOD PDB View: 5YB5 RCSB PDB: 5YB5 PDBe: 5YB5 UniProt: A0A0R5NGA4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure