ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yg1A1 - ECOD Domain | ECOD

ECOD/Domains/e5yg1A1

e5yg1A1

UID: 002407701

PDB

Range: A:1-290
PDB: 5YG1 chain A(all domains)
UniProt: A5K8L9 (all domains)
Gene: PVX_100730

Molecule: Serine hydroxymethyltransferase

3D Structure

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Related Domains

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Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilySHMT(7577.1.1.5)

Ligands

in contact, ≤ 4 Å

N-Pyridoxyl-Glycine-5-MonophosphatePLG
drugDrugBank DB02824
3-[1-[3-[(4~{S})-6-azanyl-5-cyano-3-methyl-4-propan-2-yl-2~{H}-pyrano[2,3-c]pyrazol-4-yl]-5-(trifluoromethyl)phenyl]piperidin-4-yl]propanoic acid8UU

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 5YG1 RCSB PDB: 5YG1 PDBe: 5YG1 UniProt: A5K8L9

Downloads

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Chloride ion

Shown in the structure viewer. Drug annotations from DrugDomain.