ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yi6D1 - ECOD Domain | ECOD

ECOD/Domains/e5yi6D1

e5yi6D1

UID: 002407753

PDB

Range: D:123-242
PDB: 5YI6 chain D(all domains)
UniProt: Q57820 (all domains)
Gene: cas6a

Molecule: CRISPR-associated endoribonuclease Cas6 1

3D Structure

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Related Domains

Browse other domains in Cas_Cas6_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51)

TT-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51.1)

FFamilyCas_Cas6_C(304.51.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Phosphate ion)

GlycerinGOL
DrugBank DB09462
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01881Cas_Cas6_C

CRISPR associated protein Cas6, C-terminal

ClanCL0362RAMPS-Cas5-like

External Links

ECOD PDB View: 5YI6 RCSB PDB: 5YI6 PDBe: 5YI6 UniProt: Q57820

Downloads

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