ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yicA1 - ECOD Domain | ECOD

ECOD/Domains/e5yicA1

e5yicA1

UID: 002407756

PDB

Range: A:4-331
PDB: 5YIC chain A(all domains)
UniProt: Q8I6V3 (all domains)
Gene: PMII

Molecule: Plasmepsin II

3D Structure

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Related Domains

Browse other domains in Asp →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyAsp(1.1.1.1)

Ligands

in contact, ≤ 4 Å

(4R)-3-[(2S,3S)-3-[[(2R)-2-[2-(4-aminophenyl)ethanoylamino]-3-methylsulfanyl-propanoyl]amino]-2-oxidanyl-4-phenyl-butanoyl]-5,5-dimethyl-N-[(1S,2R)-2-oxidanyl-2,3-dihydro-1H-inden-1-yl]-1,3-thiazolidine-4-carboxamide8VO
3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATECPS

+ 1 additive (Glycerin)

Pfam Families

Eukaryotic aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 5YIC RCSB PDB: 5YIC PDBe: 5YIC UniProt: Q8I6V3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.