ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ynuA1 - ECOD Domain | ECOD

ECOD/Domains/e5ynuA1

e5ynuA1

UID: 002407809

PDB

Range: A:-1-297
PDB: 5YNU chain A(all domains)
UniProt: V5TDY7 (all domains)
Gene: ambP3

Molecule: aromatic prenyltransferase

3D Structure

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Related Domains

Browse other domains in PTase_Orf2 →

Classification

AArchitecturea+b duplicates or obligate multimers(a.15)

XX-groupPrenyltransferase-like(4194)

HH-groupPrenyltransferase-like(4194.1)

TT-groupPrenyltransferase-like(4194.1.1)

FFamilyPTase_Orf2(4194.1.1.1)

Ligands

in contact, ≤ 4 Å

3-[(Z)-2-isocyanoethenyl]-1H-indole8XL
PYROPHOSPHATE 2-POP

+ 2 additives (Glycerin, Imidazole)

GlycerinGOL

Pfam Families

PF11468PTase_Orf2

Aromatic prenyltransferase Orf2

External Links

ECOD PDB View: 5YNU RCSB PDB: 5YNU PDBe: 5YNU UniProt: V5TDY7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

ImidazoleIMD

DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.