ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5ynvA1 - ECOD Domain | ECOD

ECOD/Domains/e5ynvA1

e5ynvA1

UID: 002407811

PDB

Range: A:-5-297
PDB: 5YNV chain A(all domains)
UniProt: V5TDY7 (all domains)
Gene: ambP3

Molecule: aromatic prenyltransferase

3D Structure

Loading viewer...

Related Domains

Browse other domains in PTase_Orf2 →

Classification

AArchitecturea+b duplicates or obligate multimers(a.15)

XX-groupPrenyltransferase-like(4194)

HH-groupPrenyltransferase-like(4194.1)

TT-groupPrenyltransferase-like(4194.1.1)

FFamilyPTase_Orf2(4194.1.1.1)

Ligands

in contact, ≤ 4 Å

Dimethylallyl S-ThiolodiphosphateDST
drugDrugBank DB02270

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF11468PTase_Orf2

Aromatic prenyltransferase Orf2

External Links

ECOD PDB View: 5YNV RCSB PDB: 5YNV PDBe: 5YNV UniProt: V5TDY7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.