ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yojB1 - ECOD Domain | ECOD

ECOD/Domains/e5yojB1

e5yojB1

UID: 002407815

PDB

Range: B:1-99
PDB: 5YOJ chain B(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: A17 HIV-1 protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

(4R)-N-[(2,6-dimethylphenyl)methyl]-3-[(2S,3S)-3-[[(2S)-2-[(7-methoxy-1-benzofuran-2-yl)carbonylamino]-2-[(3R)-oxolan-3-yl]ethanoyl]amino]-2-oxidanyl-4-phenyl-butanoyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide8Z0

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 5YOJ RCSB PDB: 5YOJ PDBe: 5YOJ UniProt: P03366

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.