ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yshA1 - ECOD Domain | ECOD

ECOD/Domains/e5yshA1

e5yshA1

UID: 002407934

PDB

Range: A:1-551
PDB: 5YSH chain A(all domains)
UniProt: Q59470 (all domains)
Gene: pddA

Molecule: Diol dehydrase alpha subunit

3D Structure

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Related Domains

Browse other domains in Dehydratase_LU →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyDehydratase_LU(2002.1.1.91)

Ligands

in contact, ≤ 4 Å

(S)-propane-1,2-diolPGO
drugDrugBank DB04349
5'-DEOXYADENOSINE5AD
CobalaminB12

Pfam Families

PF02286Dehydratase_LU

Dehydratase large subunit

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 5YSH RCSB PDB: 5YSH PDBe: 5YSH UniProt: Q59470

Downloads

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Calcium ionCA

metal

Potassium ionK

metal

Shown in the structure viewer. Drug annotations from DrugDomain.