ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yvdB2 - ECOD Domain | ECOD

ECOD/Domains/e5yvdB2

e5yvdB2

UID: 002408018

PDB

Range: B:188-341
PDB: 5YVD chain B(all domains)
UniProt: A0A0U2GPI9 (all domains)
Gene: orf1ab

Molecule: Nsp15

3D Structure

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Related Domains

Browse other domains in CoV_NSP15_C →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupRNase A-like(372)

HH-groupEndoU-like(372.2)

TT-groupEndoU-like(372.2.1)

FFamilyCoV_NSP15_C(372.2.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF19215CoV_NSP15_C

Coronavirus replicase NSP15, uridylate-specific endoribonuclease

ClanCL0695EndoU

External Links

ECOD PDB View: 5YVD RCSB PDB: 5YVD PDBe: 5YVD UniProt: A0A0U2GPI9

Downloads

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