ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yy5B1 - ECOD Domain | ECOD

ECOD/Domains/e5yy5B1

e5yy5B1

UID: 002408059

PDB

Range: B:380-588
PDB: 5YY5 chain B(all domains)
UniProt: K9N5Q8 (all domains)
Gene: S

Molecule: MERS-CoV RBD

3D Structure

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Related Domains

Browse other domains in bCoV_S1_RBD →

Classification

AArchitecturea+b three layers(a.12)

XX-groupCoronavirus spike protein receptor-binding domain(4169)

HH-groupCoronavirus spike protein receptor-binding domain(4169.1)

TT-groupBeta-coronavirus spike protein receptor-binding domain(4169.1.1)

FFamilybCoV_S1_RBD(4169.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF09408bCoV_S1_RBD

Betacoronavirus spike glycoprotein S1, receptor binding

External Links

ECOD PDB View: 5YY5 RCSB PDB: 5YY5 PDBe: 5YY5 UniProt: K9N5Q8

Downloads

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