ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5zh5A2 - ECOD Domain | ECOD

ECOD/Domains/e5zh5A2

e5zh5A2

UID: 002408737

PDB

Range: A:223-581
PDB: 5ZH5 chain A(all domains)
UniProt: W7JP72 (all domains)
Gene: PFNF54_04763

Molecule: Lysine--tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_2(314.1.1.1)

Ligands

in contact, ≤ 4 Å

LysineLYS
drugDrugBank DB00123
(3S)-6,8-dihydroxy-3-{[(2R,6S)-6-methyloxan-2-yl]methyl}-3,4-dihydro-1H-2-benzopyran-1-one9CX

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00152tRNA-synt_2

tRNA synthetases class II (D, K and N)

ClanCL0040tRNA_synt_II

External Links

ECOD PDB View: 5ZH5 RCSB PDB: 5ZH5 PDBe: 5ZH5 UniProt: W7JP72

Downloads

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