ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5zqbB2 - ECOD Domain | ECOD

ECOD/Domains/e5zqbB2

e5zqbB2

UID: 002408896

PDB

Range: B:52-160
PDB: 5ZQB chain B(all domains)
UniProt: Q8Y3M3 (all domains)
Gene: lmo2812

Molecule: Lmo2812 protein

3D Structure

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Related Domains

Browse other domains in Peptidase_S11 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019)

HH-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1)

TT-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1.1)

FFamilyPeptidase_S11(4019.1.1.2)

Ligands

in contact, ≤ 4 Å

Open form - penicillin gPNM

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00768Peptidase_S11

D-alanyl-D-alanine carboxypeptidase

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 5ZQB RCSB PDB: 5ZQB PDBe: 5ZQB UniProt: Q8Y3M3

Downloads

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