ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5zqbC1 - ECOD Domain | ECOD

ECOD/Domains/e5zqbC1

e5zqbC1

UID: 002408897

PDB

Range: C:24-51,C:161-270
PDB: 5ZQB chain C(all domains)
UniProt: Q8Y3M3 (all domains)
Gene: lmo2812

Molecule: Lmo2812 protein

3D Structure

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Related Domains

Browse other domains in Peptidase_S11 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyPeptidase_S11(223.3.1.2)

Ligands

in contact, ≤ 4 Å

Open form - penicillin gPNM

+ 1 additive (Glycerol)

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00768Peptidase_S11

D-alanyl-D-alanine carboxypeptidase

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 5ZQB RCSB PDB: 5ZQB PDBe: 5ZQB UniProt: Q8Y3M3

Downloads

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