ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6mn8A1 - ECOD Domain | ECOD

ECOD/Domains/e6mn8A1

e6mn8A1

UID: 002409654

PDB

Range: A:47-338
PDB: 6MN8 chain A(all domains)
UniProt: A0A2K6VKP7 (all domains)

Molecule: Uncharacterized protein

3D Structure

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Related Domains

Browse other domains in tRNA-synt_2b →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_2b(314.1.1.2)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131
GlycineGLY
drugDrugBank DB00145
Halofuginone

Pfam Families

PF00587tRNA-synt_2b

tRNA synthetase class II core domain (G, H, P, S and T)

ClanCL0040tRNA_synt_II

External Links

ECOD PDB View: 6MN8 RCSB PDB: 6MN8 PDBe: 6MN8 UniProt: A0A2K6VKP7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB04866

SerineSER

drugDrugBank DB00133

Imidodiphosphoric acid2PN

Phosphoaminophosphonic acid-adenylate esterANP

Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.