ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yvkA1 - ECOD Domain | ECOD

ECOD/Domains/e5yvkA1

e5yvkA1

UID: 002410137

RepresentativePDB

Range: A:28-225
PDB: 5YVK chain A(all domains)
UniProt: V5TER4 (all domains)

Molecule: cyclase

3D Structure

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Related Domains

Browse other domains in HpiC1-like →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupGalactose-binding domain-like(10.32)

TT-groupGalactose-binding domain-like(10.32.1)

FFamilyHpiC1-like(10.32.1.91)

Ligands

in contact, ≤ 4 Å

amino({3-[(3S,8aS)-1,4-dioxooctahydropyrrolo[1,2-a]pyrazin-3-yl]propyl}amino)methaniminium0HZ
Calcium ionCA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF22825HpiC1-like

HpiC1 cyclase

ClanCL0202GBD

External Links

ECOD PDB View: 5YVK RCSB PDB: 5YVK PDBe: 5YVK UniProt: V5TER4

Downloads

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