ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yr4A1 - ECOD Domain | ECOD

ECOD/Domains/e5yr4A1

e5yr4A1

UID: 002410368

PDB

Range: A:90-393
PDB: 5YR4 chain A(all domains)
UniProt: P53582 (all domains)
Gene: METAP1

Molecule: Methionine aminopeptidase 1

3D Structure

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Related Domains

Browse other domains in Peptidase_M24 →

Classification

AArchitecturea+b duplicates or obligate multimers(a.15)

XX-groupCreatinase/aminopeptidase-like(283)

HH-groupCreatinase/aminopeptidase(283.1)

TT-groupCreatinase/aminopeptidase(283.1.1)

FFamilyPeptidase_M24(283.1.1.1)

Ligands

in contact, ≤ 4 Å

TNP-470TN4
drugDrugBank DB08633
COBALT (II) IONCO
metal
Potassium ion

Pfam Families

PF00557Peptidase_M24

Metallopeptidase family M24

External Links

ECOD PDB View: 5YR4 RCSB PDB: 5YR4 PDBe: 5YR4 UniProt: P53582

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

K

metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.