ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6gszA1 - ECOD Domain | ECOD

ECOD/Domains/e6gszA1

e6gszA1

UID: 002410585

PDB

Range: A:427-777
PDB: 6GSZ chain A(all domains)
UniProt: I0AZ41 (all domains)
Gene: alpha-Rha

Molecule: Alpha-L-rhamnosidase

3D Structure

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Related Domains

Browse other domains in Bac_rhamnosid6H →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupalpha/alpha toroid(109.2)

TT-groupalpha/alpha toroid(109.2.1)

FFamilyBac_rhamnosid6H(109.2.1.37)

Ligands

in contact, ≤ 4 Å

Beta-D-GlucoseBGC
drugDrugBank DB02379
N-AcetylglucosamineNAG
drugDrugBank DB00141

Pfam Families

PF17389Bac_rhamnosid6H

Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain

ClanCL00596_Hairpin

External Links

ECOD PDB View: 6GSZ RCSB PDB: 6GSZ PDBe: 6GSZ UniProt: I0AZ41

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Calcium ion

metal

2-(2-METHOXYETHOXY)ETHANOLPG0

+ 4 additives (Acetate, Triethylene glycol, Pentaethylene glycol, …)

AcetateACT
DrugBank DB14511
Triethylene glycolPGE
DrugBank DB02327
Pentaethylene glycol1PE
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.