ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6gszA2 - ECOD Domain | ECOD

ECOD/Domains/e6gszA2

e6gszA2

UID: 002410586

PDB

Range: A:112-305
PDB: 6GSZ chain A(all domains)
UniProt: I0AZ41 (all domains)
Gene: alpha-Rha

Molecule: Alpha-L-rhamnosidase

3D Structure

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Related Domains

Browse other domains in Bac_rhamnosid_N →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupGalactose-binding domain-like(10.32)

TT-groupGalactose-binding domain-like(10.32.1)

FFamilyBac_rhamnosid_N(10.32.1.32)

Ligands

in contact, ≤ 4 Å

3-(N-morpholino)propanesulfonic acidMPO
drugDrugBank DB03434
Calcium ionCA
metal

+ 5 additives (Pentaethylene glycol, Acetate ion, Tetraethylene glycol, …)

Pentaethylene glycol1PE

Pfam Families

PF08531Bac_rhamnosid_N

Alpha-L-rhamnosidase N-terminal domain

ClanCL0202GBD

External Links

ECOD PDB View: 6GSZ RCSB PDB: 6GSZ PDBe: 6GSZ UniProt: I0AZ41

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Acetate ionACT

Tetraethylene glycolPG4

Triethylene glycolPGE

1,2-ETHANEDIOLEDO

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.