ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6gztA1 - ECOD Domain | ECOD

ECOD/Domains/e6gztA1

e6gztA1

UID: 002410593

PDB

Range: A:135-401
PDB: 6GZT chain A(all domains)
UniProt: B0B9A0 (all domains)
Gene: cdu1

Molecule: Deubiquitinase and deneddylase Dub1

3D Structure

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Related Domains

Browse other domains in Peptidase_C48 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyPeptidase_C48(219.1.1.16)

Ligands

in contact, ≤ 4 Å

Coenzyme ACOA
drugDrugBank DB01992

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF02902Peptidase_C48

Ulp1 protease family, C-terminal catalytic domain

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 6GZT RCSB PDB: 6GZT PDBe: 6GZT UniProt: B0B9A0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ion

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.