ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6adqW1 - ECOD Domain | ECOD

ECOD/Domains/e6adqW1

e6adqW1

UID: 002411507

PDB

Range: W:24-182
PDB: 6ADQ chain W(all domains)
UniProt: A0R562 (all domains)
Gene: MSMEG_6078

Molecule: LpqE protein

3D Structure

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Related Domains

Browse other domains in PCuAC →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupCommon fold of diphtheria toxin/transcription factors/cytochrome f(11.1.5)

FFamilyPCuAC(11.1.5.16)

Ligands

in contact, ≤ 4 Å

Palmitic AcidPLM
drugDrugBank DB03796
(2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate9XX
(2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate

Pfam Families

PF04314LpqE-like

Putative lipoprotein LpqE-like

ClanCL0159E-set

External Links

ECOD PDB View: 6ADQ RCSB PDB: 6ADQ PDBe: 6ADQ UniProt: A0R562

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate9YF

Heme cHEC

Shown in the structure viewer. Drug annotations from DrugDomain.