ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6c39B1 - ECOD Domain | ECOD

ECOD/Domains/e6c39B1

e6c39B1

UID: 002412379

PDB

Range: B:315-383
PDB: 6C39 chain B(all domains)
UniProt: A0A0H2WY27 (all domains)
Gene: pbp4

Molecule: Serine-type D-Ala-D-Ala carboxypeptidase

3D Structure

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Related Domains

Browse other domains in DUF1958 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupPenicillin-binding protein associated domain(51)

HH-groupPenicillin-binding protein associated domain(51.1)

TT-groupPenicillin-binding protein associated domain(51.1.1)

FFamilyDUF1958(51.1.1.2)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF09211DUF1958

Domain of unknown function (DUF1958)

External Links

ECOD PDB View: 6C39 RCSB PDB: 6C39 PDBe: 6C39 UniProt: A0A0H2WY27

Downloads

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