ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6c39B3 - ECOD Domain | ECOD

ECOD/Domains/e6c39B3

e6c39B3

UID: 002412381

PDB

Range: B:25-70,B:202-314
PDB: 6C39 chain B(all domains)
UniProt: A0A0H2WY27 (all domains)
Gene: pbp4

Molecule: Serine-type D-Ala-D-Ala carboxypeptidase

3D Structure

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Related Domains

Browse other domains in Peptidase_S11 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyPeptidase_S11(223.3.1.2)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00768Peptidase_S11

D-alanyl-D-alanine carboxypeptidase

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 6C39 RCSB PDB: 6C39 PDBe: 6C39 UniProt: A0A0H2WY27

Downloads

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