ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6cmvD1 - ECOD Domain | ECOD

ECOD/Domains/e6cmvD1

e6cmvD1

UID: 002412468

PDB

Range: D:12-122
PDB: 6CMV chain D(all domains)
UniProt: Q4J9G1 (all domains)
Gene: Saci_1223

Molecule: Transcriptional regulator Lrs14-like protein

3D Structure

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Related Domains

Browse other domains in TrmB →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupwinged helix domain(101.1.2)

FFamilyTrmB(101.1.2.30)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, (4r)-2-Methylpentane-2,4-Diol)

GlycerinGOL
DrugBank DB09462
(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer.

Pfam Families

Sugar-specific transcriptional regulator TrmB

ClanCL0123HTH

External Links

ECOD PDB View: 6CMV RCSB PDB: 6CMV PDBe: 6CMV UniProt: Q4J9G1

Downloads

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Drug annotations from DrugDomain.