ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6dj2A1 - ECOD Domain | ECOD

ECOD/Domains/e6dj2A1

e6dj2A1

UID: 002412688

PDB

Range: A:1-99
PDB: 6DJ2 chain A(all domains)
UniProt: P04585 (all domains)
Gene: gag-pol

Molecule: HIV-1 protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

LopinavirAB1
drugDrugBank DB01601
Chloride ionCL
Sodium ionNA

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 6DJ2 RCSB PDB: 6DJ2 PDBe: 6DJ2 UniProt: P04585

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.