ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6hu1D1 - ECOD Domain | ECOD

ECOD/Domains/e6hu1D1

e6hu1D1

UID: 002415189

PDB

Range: D:2-430
PDB: 6HU1 chain D(all domains)
UniProt: A5H660 (all domains)
Gene: HDAC8

Molecule: Histone deacetylase

3D Structure

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Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Ligands

in contact, ≤ 4 Å

4-chloranyl-3-[(2,4-dichlorophenyl)carbonylamino]-~{N}-oxidanyl-benzamideGT2
Potassium ionK
metal
Zinc ionZN

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

ECOD PDB View: 6HU1 RCSB PDB: 6HU1 PDBe: 6HU1 UniProt: A5H660

Downloads

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metal

+ 2 additives (N,N-dimethylformamide, Glycerin)

N,N-dimethylformamideDMF
DrugBank DB01844
GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.