ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yybB1 - ECOD Domain | ECOD

ECOD/Domains/e5yybB1

e5yybB1

UID: 002417443

PDB

Range: B:6-40,B:143-243,B:458-487
PDB: 5YYB chain B(all domains)
UniProt: Q7VL18 (all domains)
Gene: HD_1669

Molecule: Putative ABC transporter periplasmic binding protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_5(7523.1.1.3)

Ligands

in contact, ≤ 4 Å

N-glycolyl-beta-neuraminic acidNGE

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 5YYB RCSB PDB: 5YYB PDBe: 5YYB UniProt: Q7VL18

Downloads

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