ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yybB3 - ECOD Domain | ECOD

ECOD/Domains/e5yybB3

e5yybB3

UID: 002417445

PDB

Range: B:40-142
PDB: 5YYB chain B(all domains)
UniProt: Q7VL18 (all domains)
Gene: HD_1669

Molecule: Putative ABC transporter periplasmic binding protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupOligo-peptide binding protein (OPPA) insertion domain(304.136)

TT-groupOligo-peptide binding protein (OPPA) insertion domain(304.136.1)

FFamilySBP_bac_5(304.136.1.1)

Ligands

in contact, ≤ 4 Å

N-glycolyl-beta-neuraminic acidNGE

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 5YYB RCSB PDB: 5YYB PDBe: 5YYB UniProt: Q7VL18

Downloads

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