ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6dheR1 - ECOD Domain | ECOD

ECOD/Domains/e6dheR1

e6dheR1

UID: 002418809

PDB

Range: R:2-35
PDB: 6DHE chain R(all domains)
UniProt: Q8DKM3 (all domains)
Gene: psbY

Molecule: Photosystem II protein Y

3D Structure

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Related Domains

Browse other domains in PsbY →

Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II protein Y, psbY(6106)

HH-groupPhotosystem II protein Y, psbY(6106.1)

TT-groupPhotosystem II protein Y, psbY(6106.1.1)

FFamilyPsbY(6106.1.1.1)

Ligands

in contact, ≤ 4 Å

FerrohemeHEM
drugDrugBank DB18267
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD
Unknown ligandUNL

Pfam Families

Photosystem II protein Y (PsbY)

External Links

ECOD PDB View: 6DHE RCSB PDB: 6DHE PDBe: 6DHE UniProt: Q8DKM3

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.