ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6dq5A1 - ECOD Domain | ECOD

ECOD/Domains/e6dq5A1

e6dq5A1

UID: 002420430

PDB

Range: A:12-413,A:436-587
PDB: 6DQ5 chain A(all domains)
UniProt: P29375 (all domains)
Gene: KDM5A

Molecule: Linked KDM5A Jmj Domain

3D Structure

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Related Domains

Browse other domains in JmjC,JmjN →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC,JmjN(10.12.1.10)

Ligands

in contact, ≤ 4 Å

N-[6-(4-acryloyl-1,4-diazepan-1-yl)-2-(pyridin-2-yl)pyrimidin-4-yl]-beta-alanineH6G
MANGANESE (II) IONMN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

JmjC domain, hydroxylase

ClanCL0029Cupin

jmjN domain

ClanCL0029Cupin

External Links

ECOD PDB View: 6DQ5 RCSB PDB: 6DQ5 PDBe: 6DQ5 UniProt: P29375

Downloads

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