ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5v85A1 - ECOD Domain | ECOD

ECOD/Domains/e5v85A1

e5v85A1

UID: 002420702

PDB

Range: A:19-173
PDB: 5V85 chain A(all domains)
UniProt: A7B6P0 (all domains)
Gene: RUMGNA_03254

Molecule: EDD domain protein, DegV family

3D Structure

Loading viewer...

Related Domains

Browse other domains in DegV →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupEDD domain(2010)

HH-groupEDD domain(2010.1)

TT-groupEDD domain(2010.1.1)

FFamilyDegV(2010.1.1.1)

Ligands

in contact, ≤ 4 Å

cis-Vaccenic acidVCA
drugDrugBank DB04801
Sodium ionNA
metal

+ 1 additive (Phosphate ion)

Phosphate ionPO4

Pfam Families

Uncharacterised protein, DegV family COG1307

ClanCL0245EDD

External Links

ECOD PDB View: 5V85 RCSB PDB: 5V85 PDBe: 5V85 UniProt: A7B6P0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.