ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5v85A2 - ECOD Domain | ECOD

ECOD/Domains/e5v85A2

e5v85A2

UID: 002420703

PDB

Range: A:174-298
PDB: 5V85 chain A(all domains)
UniProt: A7B6P0 (all domains)
Gene: RUMGNA_03254

Molecule: EDD domain protein, DegV family

3D Structure

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Related Domains

Browse other domains in DegV →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-groupDAK1/DegV C-terminal domain(301.13)

TT-groupDAK1/DegV C-terminal domain(301.13.1)

FFamilyDegV(301.13.1.1)

Ligands

in contact, ≤ 4 Å

cis-Vaccenic acidVCA
drugDrugBank DB04801

+ 1 additive (Phosphate ion)

Phosphate ionPO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Uncharacterised protein, DegV family COG1307

ClanCL0245EDD

External Links

ECOD PDB View: 5V85 RCSB PDB: 5V85 PDBe: 5V85 UniProt: A7B6P0

Downloads

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