ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xysA1 - ECOD Domain | ECOD

ECOD/Domains/e5xysA1

e5xysA1

UID: 002420714

PDB

Range: A:19-355
PDB: 5XYS chain A(all domains)
UniProt: Q57326 (all domains)

Molecule: Endo-type 6-aminohexanoate oligomer hydrolase

3D Structure

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Related Domains

Browse other domains in Peptidase_S58 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupMocoBD/DmpA-related(231)

HH-groupMocoBD/DmpA-related(231.1)

TT-groupDmpA/ArgJ(231.1.2)

FFamilyPeptidase_S58(231.1.2.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Phosphate ion)

GlycerinGOL
DrugBank DB09462
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03576Peptidase_S58

Peptidase family S58

ClanCL0635DmpA_ArgJ

External Links

ECOD PDB View: 5XYS RCSB PDB: 5XYS PDBe: 5XYS UniProt: Q57326

Downloads

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