ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ytaB1 - ECOD Domain | ECOD

ECOD/Domains/e5ytaB1

e5ytaB1

UID: 002420746

PDB

Range: B:2-161
PDB: 5YTA chain B(all domains)
UniProt: P00336 (all domains)
Gene: LDHB

Molecule: L-lactate dehydrogenase B chain

3D Structure

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Related Domains

Browse other domains in Ldh_1_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyLdh_1_N(2003.1.1.2)

Ligands

in contact, ≤ 4 Å

NadideNAD
drugDrugBank DB14128
Oxamic AcidOXM
drugDrugBank DB03940

Shown in the structure viewer. Drug annotations from .

Pfam Families

PF00056Ldh_1_N

lactate/malate dehydrogenase, NAD binding domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5YTA RCSB PDB: 5YTA PDBe: 5YTA UniProt: P00336

Downloads

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