ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6f2pA3 - ECOD Domain | ECOD

ECOD/Domains/e6f2pA3

e6f2pA3

UID: 002426586

PDB

Range: A:635-761
PDB: 6F2P chain A(all domains)
UniProt: A0A493R6T1 (all domains)

Molecule: Paenibacillus xanthan lyase

3D Structure

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Related Domains

Browse other domains in Lyase_8_C →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupGlycosyl hydrolase domain-like(12)

HH-groupHyaluronate lyase-like, C-terminal domain(12.2)

TT-groupHyaluronate lyase-like, C-terminal domain(12.2.1)

FFamilyLyase_8_C(12.2.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
(4R)-2-METHYLPENTANE-2,4-DIOLMRD

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD

Pfam Families

PF02884Lyase_8_C

Polysaccharide lyase family 8, C-terminal beta-sandwich domain

External Links

ECOD PDB View: 6F2P RCSB PDB: 6F2P PDBe: 6F2P UniProt: A0A493R6T1

Downloads

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DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.