ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6gypD1 - ECOD Domain | ECOD

ECOD/Domains/e6gypD1

e6gypD1

UID: 002426726

PDB

Range: D:4-35,D:74-192
PDB: 6GYP chain D(all domains)
UniProt: P52286 (all domains)
Gene: SKP1

Molecule: Suppressor of kinetochore protein 1

3D Structure

Loading viewer...

Related Domains

Browse other domains in Skp1,Skp1_POZ →

Classification

AArchitecturea+b two layers(a.11)

XX-groupPOZ domain(226)

HH-groupPOZ domain(226.1)

TT-groupPOZ domain(226.1.1)

FFamilySkp1,Skp1_POZ(226.1.1.3)

Ligands

in contact, ≤ 4 Å

ArginineARG
drugDrugBank DB00125within 5 Å only
AsparagineASN
drugDrugBank DB00174within 5 Å only

Pfam Families

Skp1 family, dimerisation domain

PF03931Skp1_POZ

Skp1 family, tetramerisation domain

ClanCL0033POZ

External Links

ECOD PDB View: 6GYP RCSB PDB: 6GYP PDBe: 6GYP UniProt: P52286

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

MethionineMET

drugDrugBank DB00134within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.