ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ys3C1 - ECOD Domain | ECOD

ECOD/Domains/e5ys3C1

e5ys3C1

UID: 002427622

PDB

Range: C:5-186
PDB: 5YS3 chain C(all domains)
UniProt: A8ALU5 (all domains)
Gene: CKO_03375

Molecule: Succinate-Acetate Permease

3D Structure

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Related Domains

Browse other domains in Gpr1_Fun34_YaaH →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupAcid-activated urea channel(3543)

HH-groupAcid-activated urea channel(3543.1)

TT-groupAcid-activated urea channel(3543.1.1)

FFamilyGpr1_Fun34_YaaH(3543.1.1.1)

Ligands

in contact, ≤ 4 Å

Palmitic AcidPLM
drugDrugBank DB03796
(2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE78M

+ 1 additive (Acetate)

Acetate

Pfam Families

PF01184Gpr1_Fun34_YaaH

GPR1/FUN34/yaaH family

ClanCL0997AmiS-like

External Links

ECOD PDB View: 5YS3 RCSB PDB: 5YS3 PDBe: 5YS3 UniProt: A8ALU5

Downloads

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DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.