ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5ys8C1 - ECOD Domain | ECOD

ECOD/Domains/e5ys8C1

e5ys8C1

UID: 002427766

PDB

Range: C:6-186
PDB: 5YS8 chain C(all domains)
UniProt: A8ALU5 (all domains)
Gene: CKO_03375

Molecule: Succinate-Acetate Permease

3D Structure

Loading viewer...

Related Domains

Browse other domains in Gpr1_Fun34_YaaH →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupAcid-activated urea channel(3543)

HH-groupAcid-activated urea channel(3543.1)

TT-groupAcid-activated urea channel(3543.1.1)

FFamilyGpr1_Fun34_YaaH(3543.1.1.1)

Ligands

in contact, ≤ 4 Å

(2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE78M

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01184Gpr1_Fun34_YaaH

GPR1/FUN34/yaaH family

ClanCL0997AmiS-like

External Links

ECOD PDB View: 5YS8 RCSB PDB: 5YS8 PDBe: 5YS8 UniProt: A8ALU5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure