ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6g1bJ2 - ECOD Domain | ECOD

ECOD/Domains/e6g1bJ2

e6g1bJ2

UID: 002427930

PDB

Range: J:68-319
PDB: 6G1B chain J(all domains)
UniProt: Q8NP91 (all domains)
Gene: Cgl1925

Molecule: Hydrogen peroxide-inducible genes activator

3D Structure

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Related Domains

Browse other domains in LysR_substrate →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLysR_substrate(7523.1.1.15)

Ligands

in contact, ≤ 4 Å

Hydrogen peroxidePEO
drugDrugBank DB11091
3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE1PS
Sodium ionNA

Pfam Families

PF03466LysR_substrate

LysR substrate binding domain

ClanCL0177PBP

External Links

ECOD PDB View: 6G1B RCSB PDB: 6G1B PDBe: 6G1B UniProt: Q8NP91

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

NICKEL (II) IONNI

metal

+ 1 additive (Formic acid)

Formic acidFMT
DrugBank DB01942

Shown in the structure viewer. Drug annotations from DrugDomain.